Publications: (From Web of Science through Publons, Google Scholar).


Journal Papers:


  1. Phase properties of squeezed states

    1. Grønbech-Jensen, P. L. Christiansen, and P. S. Ramanujam

      Journal of the Optical Society of America B 6, 2423 (1989).

  2. Phase-locking of fluxon oscillations in long Josephson junctions coupled through a resonator

    N. Grønbech-Jensen, R. D. Parmentier, and N. F. Pedersen

    Physics Letters A 142, 427 (1989).

  3. Generation of sub-Poissonian photon number distribution

    N. Grønbech-Jensen and P. S. Ramanujam

    Physical Review A 41, 2906 (1990).

  4. Phase locking between Josephson soliton oscillators

    T. Holst, J. B. Hansen, N. Grønbech-Jensen, and J. A. Blackburn

    Physical Review B 42, 127 (1990).

  5. Bunched soliton states in weakly coupled sine-Gordon systems

    N. Grønbech-Jensen, M. R. Samuelsen, P. S. Lomdahl, and J. A. Blackburn

    Physical Review B 42, 3976 (1990).

  6. Numerical study of long Josephson junctions coupled to a high-Q cavity

    N. Grønbech-Jensen, A. Davidson, N. F. Pedersen, and R. D. Parmentier

    Physical Review B 42, 6035 (1990).

  7. Self-locking of fluxon oscillations in series arrays of niobium Josephson tunnel junctions coupled to a linear resonator

    R. Monaco, N. Grønbech-Jensen, and R. D. Parmentier

    Physics Letters A 151, 195 (1990).

  8. Phase-locked Josephson soliton oscillators

    T. Holst, J. B. Hansen, N. Grønbech-Jensen, and J. A. Blackburn

    IEEE. Transactions on Magnetics MAG-27, 2704 (1991).

  9. Josephson soliton oscillator arrays for SIS mixers

    A. Davidson, N. Groenbech-Jensen, and N. F. Pedersen

    IEEE. Transactions on Magnetics MAG-27, 3347 (1991).

  10. Stabilization of breathers in a parametrically driven sine-Gordon system with loss

    N. Grønbech-Jensen, Yu. S. Kivshar, and M. R. Samuelsen

    Physical Review B 43, 5698 (1991).

  11. Phase-locking of long annular Josephson junctions coupled to an external rf magnetic field

    N. Grønbech-Jensen, P. S. Lomdahl, and M. R. Samuelsen

    Physics Letters A 154, 14 (1991).

  12. Bifurcation and chaos in a dc-driven long annular Josephson junction

    N. Grønbech-Jensen, P. S. Lomdahl, and M. R. Samuelsen

    Physical Review B 43, 12799 (1991).

  13. Resonant steps in the characteristics of a Josephson junction coupled to a transmission line

    J. A. Blackburn, H. J. T. Smith, and N. Grønbech-Jensen

    Journal of Applied Physics 70, 2395 (1991).

  14. Zero-voltage states in ac-driven long Josephson junctions

    Niels Grønbech-Jensen

    Physical Review B 45, 7315 (1992).

  15. π-kinks in a parametrically driven sine-Gordon chain

    Yuri S. Kivshar, Niels Grønbech-Jensen, and Mogens R. Samuelsen

    Physical Review B 45, 7789 (1992).

  16. Langevin-dynamics simulation of relaxation in large frustrated Josephson-junction arrays

    N. Grønbech-Jensen, F. Falo, A. R. Bishop, and P. S. Lomdahl

    Physical Review B 45, 10139 (1992).

  17. Microscopic tunneling theory of long Josephson junctions

    N. Grønbech-Jensen, S. A. Hattel, and M. R. Samuelsen

    Physical Review B 45, 12457 (1992).

  18. Dynamics of an annular Josephson junction in a rotating magnetic field

    Niels Grønbech-Jensen, Boris A. Malomed, and Mogens R. Samuelsen

    Physical Review B 46, 294 (1992).

  19. Effect of thermal noise on the phase locking of a Josephson fluxon oscillator

    N. Grønbech-Jensen, M. Salerno, and M. R. Samuelsen

    Physical Review B 46, 308 (1992).

  20. Stability of breathers in the ac-driven sine-Gordon system

    Niels Grønbech-Jensen, Boris A. Malomed, and Mogens R. Samuelsen

    Physics Letters A 166, 347 (1992).

  21. Phase-locking of soliton motion in uniformly driven sine-Gordon systems

    Niels Grønbech-Jensen

    Physics Letters A 169, 31 (1992).

  22. Stability and Hopf bifurcation in an inverted pendulum

    J. A. Blackburn, H. J. T. Smith, and N. Grønbech-Jensen

    American Journal of Physics 60, 903 (1992) ibid. 61, 475 (1993).

  23. Model studies of long Josephson junction arrays coupled to a high-Q resonator

    G. Filatrella, G. Rotoli, N. Grønbech-Jensen, R. D. Parmentier, and N. F. Pedersen

    Journal of Applied Physics 72, 3179 (1992).

  24. Flux-lattice noise and symmetry breaking in frustrated Josephson-junction arrays

    N. Grønbech-Jensen, F. Falo, A. R. Bishop, and P. S. Lomdahl

    Physical Review B 46, 11149 (1992).

    N. Grønbech-Jensen, Yu. S. Kivshar, and M. R. Samuelsen

    Accepted for publication in Soviet Physics Solid State (1991). (issue never published due to lack of paper!).

  25. Inverted kinks in ac driven damped sine-Gordon chains

    Niels Grønbech-Jensen and Yuri S. Kivshar

    Physics Letters A 171, 338 (1992).

  26. On the switching between soliton dynamic states in long Josephson junctions

    G. Filatrella, R. D. Parmentier, S. Pagano, P. L. Christiansen, M. P. Sørensen, and N. Grønbech-Jensen

    Physics Letters A 172, 127 (1992).

  27. Josephson junctions with delayed feedback

    Niels Grønbech-Jensen, James A. Blackburn, Bernardo A. Huberman, and H. J. T. Smith

    Physics Letters A 172, 131 (1992).

  28. Data-parallel Langevin dynamics simulations of Josephson junction arrays

    Peter S. Lomdahl and Niels Grønbech-Jensen

    Physica D 68, 18 (1993).

  29. Multi-million particle molecular dynamics on the CM-5

    P. S. Lomdahl, D. M. Beazley, P. Tamayo, and N. Grønbech-Jensen

    International Journal of Modern Physics C 4, 17 (1993).

  30. Hyperradiance from phase-locked soliton oscillators

    Niels Grønbech-Jensen and James A. Blackburn

    Physical Review Letters 70, 1251 (1993).

  31. Nonlinear dynamics of a parametrically driven sine-Gordon system

    Niels Grønbech-Jensen, Yuri S. Kivshar, and Mogens R. Samuelsen

    Physical Review B 47, 5013 (1993).

  32. Coupling of microwaves to fluxon motion in Josephson junctions

    Niels Grønbech-Jensen

    Physical Review B 47, 5504 (1993).

  33. Fluxons in three long coupled Josephson junctions

    A. Grunnet-Jepsen, F. N. Fahrendorf, S. A. Hattel, N. Grønbech-Jensen, and M. R. Samuelsen

    Physics Letters A 175, 116 (1993).

  34. Solitons on oscillating and rotating backgrounds

    Niels Grønbech-Jensen, Yuri S. Kivshar, and Mario Salerno

    Physical Review Letters 70, 3181 (1993).

  35. Synchronization of fluxon motion on Shapiro steps in Josephson junctions

    Niels Grønbech-Jensen and Peter S. Lomdahl

    Physics Letters A 177, 351 (1993).

  36. Analytical and numerical analysis of fluxon motion in Josephson junctions – microscopic theory

    Søren A. Hattel, Niels Grønbech-Jensen and Mogens R. Samuelsen

    Physics Letters A 178, 150 (1993).

  37. Fluxons in magnetically coupled Josephson junctions

    Niels Grønbech-Jensen, Ole H. Olsen, and Mogens R. Samuelsen

    Physics Letters A 179, 27 (1993).

  38. Fluxon bunching in supercurrent coupled Josephson junctions

    Niels Grønbech-Jensen, Peter S. Lomdahl, and Mogens R. Samuelsen

    Physical Review B 48, 6353 (1993).

  39. Dynamical properties of Josephson junctions coupled by a transmission line

    H. J. T. Smith, James A. Blackburn, and Niels Grønbech-Jensen

    Journal of Applied Physics 74, 5101 (1993).

  40. Hyperradiance from soliton oscillators synchronized by capacitive or inductive coupling

    Niels Grønbech-Jensen and James A. Blackburn

    Journal of Applied Physics 74, 6432 (1993).

  41. Stability of bunched fluxon states in magnetically coupled Josephson junctions

    Niels Grønbech-Jensen, David Cai, and Mogens R. Samuelsen

    Physical Review B 48, 16160 (1993).

  42. Localized states in discrete nonlinear Schro¨ dinger equations

    David Cai, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review Letters 72, 591 (1994).

  43. Stabilizing breathers in nonlinear Schro¨ dinger equations driven by two frequencies

    David Cai, A. R. Bishop, Niels Grønbech-Jensen, and Boris A. Malomed

    Physical Review E 49, 1000 (1994).

  44. Bound solitons in the ac-driven, damped, nonlinear Schrodinger equation

    David Cai, A. R. Bishop, Niels Grønbech-Jensen, and Boris A. Malomed

    Physical Review E 49, 1677 (1994).

  45. Long Josephson junctions with uniform dc and rf driving currents: General results for the phase-locked regimes

    M. Cirillo, P. Cocciolo, V. Merlo, R. D. Parmentier, and Niels Grønbech-Jensen

    Journal of Applied Physics 75, 2125 (1994).

  46. Harmonic synchronization in resistively coupled Josephson junctions

    James A. Blackburn, Niels Grønbech-Jensen, and H. J. T. Smith

    Journal of Applied Physics 75, 3668 (1994).

  47. Transitions from quasiperiodicity to chaos in a soliton oscillator

    M. Cirillo, A. R. Bishop, N. Grønbech-Jensen, and P. S. Lomdahl

    Physical Review E 49, 3606 (1994).

  48. Kinks in the presence of rapidly varying perturbations

    Yuri S. Kivshar, Niels Grønbech-Jensen, and Robert D. Parmentier

    Physical Review E 49, 4542 (1994).

  49. Long time overdamped Langevin simulations of molecular chains

    Niels Grønbech-Jensen and Sebastian Doniach

    Journal of Computational Chemistry 15, 997 (1994).

  50. Bunched fluxons in coupled Josephson junctions

    Niels Grønbech-Jensen, David Cai, A. R. Bishop, A. W. C. Lau, and Peter S. Lomdahl

    Physical Review B 50, 6352 (1994).

  51. Moving solitons in the damped Ablowitz-Ladik model driven by a standing wave

    David Cai, A. R. Bishop, Niels Grønbech-Jensen, and Boris A. Malomed

    Physical Review E 50, 694 (1994).

  52. Phase-locking of an overdamped pendulum

    Niels Grønbech-Jensen and Mogens R. Samuelsen

    Physics Letters A 191, 57 (1994).

  53. Phase-locking of Fiske modes in sine-Gordon systems

    Niels Grønbech-Jensen and Matteo Cirillo

    Physical Review B 50, 12851 (1994).

  54. Long range magnetic interaction between Josephson junctions

    Niels Grønbech-Jensen and Mogens R. Samuelsen

    Physical Review Letters 74, 170 (1995).

  55. Stochastic noise and chaotic transients

    James A. Blackburn, Niels Grønbech-Jensen, and H. J. T. Smith

    Physical Review Letters 74, 908 (1995).

  56. Electric field-induced nonlinear Bloch oscillations and dynamical localization

    David Cai, A. R. Bishop, Niels Grønbech-Jensen, and Mario Salerno

    Physical Review Letters 74, 1186 (1995).

  57. Uniform coupling of microwaves to nonlinear resonant modes in Josephson junctions

    Niels Grønbech-Jensen, Peter S. Lomdahl, and Matteo Cirillo

    Physical Review B 51, 11690 (1995).

  58. Relaxation towards phase-locked dynamics in long Josephson junctions

    Mario Salerno, Niels Grønbech-Jensen, and Mogens R. Samuelsen

    Physical Review B 51, 15613 (1995).

  59. Roughening transitions of driven surface growth

    Angel Sa´nchez, David Cai, Niels Grønbech-Jensen, A. R. Bishop, and Z. J. Wang

    Physical Review B 51, 14664 (1995).

  60. Molecular Reconnaisance

    Niels Grønbech-Jensen, Tim Germann, Peter Lomdahl, and David Beazley

    Cover Story, IEEE Computational Science & Engineering, summer issue (1995).

  61. Transformer configuration in three dimensional Josephson lattices at zero magnetic field

    Daniel Dom´ınguez, Niels Grønbech-Jensen, A. R. Bishop, and Subodh Shenoy

    Physical Review Letters 75, 717 (1995).

  62. High frequency pumping of Josephson soliton oscillators

    M. Cirillo, G. Rotoli, A. R. Bishop, N. Grønbech-Jensen, and P. S. Lomdahl

    Physical Review B 52, 506 (1995).

  63. Smoothing of rough surfaces

    Angel Sa´nchez, A. R. Bishop, David Cai, and Niels Grønbech-Jensen

    Physical Review B 52, 5433 (1995).

  64. Resistive hysteresis and nonlinear IV characteristics at the first-order melting of the Abrikosov vortex lattice

    Daniel Dom´ınguez, Niels Grønbech-Jensen, A. R. Bishop

    Physical Review Letters 75, 4670 (1995).

  65. Spatially localized, temporally quasi-periodic, discrete nonlinear excitations

    David Cai, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 52, 5784 (1995).

  66. Simulations of current driven three dimensional Josephson junction arrays

    Niels Grønbech-Jensen, Daniel Dom´ınguez, and A. R. Bishop

    Physica B 222, 396 (1996).

  67. Discrete lattice effects on breathers in a spatially linear potential

    David Cai, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 53, 1202 (1996).

  68. Metastable filamentary vortex flow in thin film superconductors

    Niels Grønbech-Jensen, A. R. Bishop, and Daniel Dom´ınguez

    Physical Review Letters 76, 2985 (1996).

  69. Perturbation theories of a discrete, integrable nonlinear Schro¨ dinger equation

    David Cai, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 53, 4131 (1996).

  70. Phase diffusion in a chaotic pendulum

    James A. Blackburn and Niels Grønbech-Jensen

    Physical Review E 53, 3068 (1996).

  71. Phase-locking between Fiske and flux-flow modes in coupled sine-Gordon systems

    Niels Grønbech-Jensen, James A. Blackburn, and Mogens R. Samuelsen

    Physical Review B 53, 12364 (1996).

  72. Potentials of Mean Force for biomolecular simulations: Theory and test on alanine dipeptide

    Matteo Pellegrini, Niels Grønbech-Jensen, and Sebastian Doniach

    Journal of Chemical Physics 104, 8639 (1996).

  73. Chaos and thermal noise in a Josephson junction coupled to a resonant tank

    James A. Blackburn, H. J. T. Smith, and Niels Grønbech-Jensen

    Physical Review B 53, 14546 (1996).

  74. Interaction of a soliton with point impurities in an inhomogeneous, discrete nonlinear Schro¨ dinger system

    V. V. Konotop, David Cai, M. Salerno, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 53, 6476 (1996).

  75. Phenomenological electronic stopping power model for molecular dynamics and Monte Carlo simulation of ion implantation into silicon

    David Cai, Niels Grønbech-Jensen, Charles C. Snell, and Keith M. Beardmore

    Physical Review B 54, 17147 (1996).

  76. Summation of logarithmic interactions in periodic media

    Niels Grønbech-Jensen

    International Journal of Modern Physics C 7, 873 (1996).

  77. Zero-temperature landscape of the random sine-Gordon model

    Angel Sa´nchez, A. R. Bishop, David Cai, Niels Grønbech-Jensen, and Francisco Dom´ınguez-Adame

    Physica D 107, 326 (1997).

  78. Dark shock waves in the nonlinear Schro¨ dinger system with internal losses

    David Cai, A. R. Bishop, Niels Grønbech-Jensen, and Boris A. Malomed

    Physical Review Letters 78, 223 (1997).

  79. Ab-initio calculations of the gold-sulfur interaction for alkane-thiol monolayers

    K. M. Beardmore, J. D. Kress, A. R. Bishop, and N. Grønbech-Jensen

    Synthetic Metals 84, 317 (1997).

  80. Coherence and complexity in condensed matter: Josephson junction arrays

    Daniel Dom´ınguez, A. R. Bishop, and Niels Grønbech-Jensen

    International Journal on Bifurcation and Chaos 7, 979 (1997).

  81. Oscillations of eccentric pulsons

    P. L. Christiansen, Niels Grønbech-Jensen, Peter S. Lomdahl, and Boris A. Malomed

    Physica Scripta 55, 131 (1997).

  82. Counterion-induced attraction between rigid polyelectrolytes

    Niels Grønbech-Jensen, Robert J. Mashl, Robijn F. Bruinsma, and William M. Gelbart

    Physical Review Letters 78, 2477 (1997).

  83. First-order melting of a moving vortex lattice: effects of disorder

    Daniel Dom´ınguez, Niels Grønbech-Jensen, and A. R. Bishop

    Physical Review Letters 78, 2644 (1997).

  84. Dynamics of nonlinear localized states on finite discrete chains

    K. Ø. Rasmussen, David Cai, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 55, 6151 (1997).

  85. Simulations of thermodynamic properties of a short polyalanine peptide using Potentials of Mean Force

    Matteo Pellegrini, Niels Grønbech-Jensen, and Sebastian Doniach

    Physica A 239, 244 (1997).

  86. A nonlinear-discrete model of dynamic fracture instability

    S. J. Zhou, N. Grønbech-Jensen, A. R. Bishop, P. S. Lomdahl, and B. L. Holian

    Physics Letters A 232, 183 (1997).

  87. Lekner summation of Coulomb interactions in partially periodic systems

    Niels Grønbech-Jensen, Gerhard Hummer, and Keith M. Beardmore

    Molecular Physics 92, 941 (1997).

  88. Dynamical evidence of critical fields in Josephson junctions

    M. Cirillo, T. Doderer, S. G. Lachenmann, F. Santucci, and N. Grønbech-Jensen

    Physical Review B 56, 11889 (1997).

  89. Highly constrained multiple-copy refinement of protein crystal structures

    Matteo Pellegrini, Niels Grønbech-Jensen, Jennifer A. Kelly, Gaston M. U. Pfluegl, and Todd O. Yeates

    Proteins: Structure, Function, and Genetics 29, 426 (1997).

  90. Resonance in the collision of two discrete intrinsic localized excitations

    David Cai, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 56, 7246 (1997).

  91. Lekner summation of long range interactions in periodic systems

    Niels Grønbech-Jensen

    International Journal of Modern Physics C 8, 1287 (1997).

  92. Determination of the headgroup-gold(111) potential surface for alkanethiol self-assembled monolayers by ab initio calculations

    Keith M. Beardmore, Joel D. Kress, Niels Grønbech-Jensen, and A. R. Bishop

    Chemical Physics Letters 286, 40 (1998).

  93. Efficient molecular dynamics scheme for the calculation of dopant profiles due to ion implantation

    Keith M. Beardmore and Niels Grønbech-Jensen

    Physical Review E 57, 7278 (1998).

  94. Simulation of phosphorous implantation into silicon with a phenomenological electronic stopping power model

    David Cai, Charles M. Snell, Keith M. Beardmore, and Niels Grønbech-Jensen

    International Journal of Modern Physics C 9, 459 (1998).

  95. Creation and annihilation of intrinsic localized excitations

    K. Ø. Rasmussen, A. R. Bishop, and N. Grønbech-Jensen

    Physical Review E 58, 40 (1998).

  96. π-kinks in strongly ac driven sine-Gordon systems

    Vadim Zharnitsky, Igor Mitkov, and Niels Grønbech-Jensen

    Physical Review E 58, 52 (1998).

  97. Pressure calculation in polar and charged systems using Ewald summation: Results for the extended simple point charge model of water

    Gerhard Hummer, Niels Grønbech-Jensen, and Martin Neumann

    Journal of Chemical Physics 109, 2791 (1998).

  98. Effective interactions between rigid polyelectrolytes and like-charged planar surfaces

    Robert J. Mashl and Niels Grønbech-Jensen

    Journal of Chemical Physics 109, 4617 (1998).

  99. Fiske modes and Eck steps in long Josephson junctions: Theory and Experiments

    Matteo Cirillo, Niels Grønbech-Jensen, Mogens R. Samuelsen, Mario Salerno, and G. Verona Rinati

    Physical Review B 58, 12377 (1998).

  100. Soliton motion in a parametrically ac-driven damped Toda lattice

    K. Ø. Rasmussen, Boris A. Malomed, A. R. Bishop, and Niels Grønbech-Jensen

    Physical Review E 58, 6695 (1998).

  101. Interactions between charged spheres in divalent counterion solution

    Niels Grønbech-Jensen, Keith M. Beardmore, and Philip Pincus

    Physica A 261, 74 (1998).

  102. A new constrained Langevin method: Application to protein crystallographic refinement

    Matteo Pellegrini, Nick Larsen, Todd O. Yeates, and Niels Grønbech-Jensen

    Physica A 261, 224 (1998).

  103. A perturbed Toda lattice model for low loss nonlinear transmission lines

    David Cai, Niels Grønbech-Jensen, A. R. Bishop, A. T. Findikoglu, and D. Reagor

    Physica D 123, 291 (1998).

  104. New potential applications of nonlinear dielectrics: microwave solitons and stochastic resonance

    A. T. Findikoglu, Q. X. Jia, D. W. Reagor, Y. Fan, G. D. Lythe, R. A. Camassa, D. Cai, N. Grønbech-Jensen, and A. R. Bishop

    Integrated Ferroelectrics 22, 259 (1998).

  105. Analysis of linear branches in the I-V characteristics of Josephson junctions

    M. Cirillo, V. Merlo, and Niels Grønbech-Jensen

    IEEE Transactions on Applied Superconductivity 9, 4137 (1999).

  106. An efficient molecular dynamics scheme for predicting dopant implant profiles in semiconductors

    Keith M. Beardmore and Niels Grønbech-Jensen

    Nuclear Instruments and Methods in Physics Research B 153, 391 (1999).

  107. Higher-order effects on Shapiro steps in Josephson junctions

    Kim Ø. Rasmussen, Vadim Zharnitsky, Igor Mitkov, and Niels Grønbech-Jensen

    Physical Review B 59, 58 (1999).

  108. Theoretical and experimental adsorption studies of polyelectrolytes on an oppositely charged surface

    Robert J. Mashl, Niels Grønbech-Jensen, M. R. Fitzsimmons, M. Lu¨ tt, and DeQuan Li

    Journal of Chemical Physics 110, 2219 (1999).

  109. Finite temperature dynamics of vortices in the two dimensional anisotropic Heisenberg model

    T. Kammpeter, F. G. Mertens, A. Sanchez, A. R. Bishop, F. Dominguez-Adame, and N. Grønbech-Jensen

    European Physical Journal B 7, 607 (1999).

  110. Pulse-shaping using nonlinear dielectric SrTiO3

    A. T. Findikoglu, D. W. Reagor, K. Ø. Rasmussen, A. R. Bishop, N. Grønbech-Jensen, Q. X. Jia, Y. Fan, and C. Kwon

    Applied Physics Letters 74, 1770 (1999).

  111. Charge ordering and long range interactions in layered transition metal oxides

    Branko P. Stojkovic, and Z. G. Yu, A. R. Bishop, A. H. Castro Neto, and Niels Grønbech-Jensen

    Physical Review Letters 82, 4679 (1999).

  112. Electrodynamic properties of coplanar waveguides made from high-temperature superconducting YBa2Cu3O7−δ electrodes on nonlinear dielectric SrTiO3 substrates

    A. T. Findikoglu, D. W. Reagor, K. Ø. Rasmussen, A. R. Bishop, N. Grønbech-Jensen, Q. X. Jia, Y. Fan, C. Kwon, and L. A. Ostrovsky

    Journal of Applied Physics 86, 1558 (1999).

  113. Summation of logarithmic interactions in non-rectangular periodic media

    Niels Grønbech-Jensen

    Computer Physics Communications 119, 115 (1999).

  114. Direct simulation of ion beam induced stress and amorphization of silicon

    Keith M. Beardmore and Niels Grønbech-Jensen

    Physical Review B 60, 12610 (1999).

  115. Localization in a nonlinear disordered system

    K. Ø. Rasmussen, D. Cai, A. R. Bishop, and N. Grønbech-Jensen

    Europhysics Letters 47, 421 (1999).

  116. Hall noise and transverse freezing in driven vortex lattices

    Alejandro B. Kolton, Daniel Dom´ınguez, and Niels Grønbech-Jensen

    Physical Review Letters 83, 3061 (1999).

  117. Shapiro steps in driven vortex lattices interacting with periodic pinning arrays

    C. Reichhardt, R. T. Scalettar, G. T. Zima´nyi, and N. Grønbech-Jensen

    Physica C 332, 1 (2000).

  118. Dynamical ordering in the c-axis in 3D driven vortex lattices

    Alejandro B. Kolton, Daniel Dom´ınguez, and Niels Grønbech-Jensen

    Physica C 341-348, 1007 (2000).

  119. Vortex pinning and dynamics in layered superconductors with periodic pinning arrays

    Charles Reichhardt, Cynthia J. Olson, and Niels Grønbech-Jensen

    Physica C 341-348, 1081 (2000).

  120. Depinning and dynamic phases in driven three-dimensional vortex lattices in anisotropic superconductors

    C. J. Olson and N. Grønbech-Jensen

    Physica C 341-348, 1083 (2000).

  121. Statistical mechanics of a discrete nonlinear system

    K. Ø. Rasmussen, T. Cretegny, P. G. Kevrekidis, and N. Grønbech-Jensen

    Physical Review Letters 84, 3740 (2000).

  122. Phase-locking of vortex lattices interacting with periodic pinning

    Charles Reichhardt, Richard T. Scalettar, Gergely T. Zima´nyi, and Niels Grønbech-Jensen

    Physical Review B 61, 11914 (2000).

  123. Interactions between charged rods near salty surfaces

    Rebecca Menes, Niels Grønbech-Jensen, and Philip A. Pincus

    European Physical Journal E 1, 345 (2000).

  124. The effect of splayed pins on vortex creep and critical currents

    C. J. Olson, R. T. Scalettar, G. T. Zima´nyi, and N. Grønbech-Jensen

    Physical Review B 62, 3612 (2000).

  125. Charge ordering and long-range interactions in layered transition metal oxides: a quasiclassical continuum study

    Branko Stojkovic, Z. G. Yu, A. L. Chernyshev, A. R. Bishop, A. H. Castro Neto, and Niels Grønbech-Jensen

    Physical Review B 62, 4353 (2000).

  126. Collective multi-vortex states in periodic arrays of traps

    Charles Reichhardt and Niels Grønbech-Jensen

    Physical Review Letters 85, 2372 (2000).

  127. Critical currents and vortex states at fractional matching fields in superconductors with periodic pinning

    Charles Reichhardt and Niels Grønbech-Jensen

    Physical Review B 63, 54510 (2000).

  128. Driven vortices in 3D layered superconductors: Dynamical ordering along the c-axis

    Alejandro B. Kolton, Daniel Dom´ınguez, Cynthia J. Olson, and Niels Grønbech-Jensen

    Physical Review B 62, 14657 (2000).

  129. Static and Dynamic coupling transitions of vortex lattices in disordered anisotropic superconductors

    Cynthia J. Olson, Gergely T. Zima´nyi, Alejandro B. Kolton, and Niels Grønbech-Jensen

    Physical Review Letters 85, 5416 (2000).

  130. Simulation of protein folding by reaction path annealing

    Peter Eastman, Niels Grønbech-Jensen, and Sebastian Doniach

    Journal of Chemical Physics 114, 3823 (2001).

  131. Moving Wigner glasses and smectics: Dynamics of disordered Wigner crystals Charles

    Reichhardt, Cynthia J. Olson, Niels Grønbech-Jensen, and Franco Nori

    Physical Review Letters 86, 4354 (2001).

  132. Complex dynamical flow phases and pinning in superconductors with rectangular pinning arrays

    Charles Reichhardt, G. T. Zima´nyi, and Niels Grønbech-Jensen

    Physical Review B 64, 014501 (2001).

  133. Mode-locking in ac-driven vortex lattices with random pinning

    Alejandro B. Kolton, Daniel Dom´ınguez, and Niels Grønbech-Jensen

    Physical Review Letters 86, 4112 (2001) ibid. 88, 079902 (2002).

  134. Phase-locking of driven vortex lattices with transverse ac-force and periodic pinning

    Charles Reichhardt, Alejandro B. Kolton, Daniel Dom´ınguez, and Niels Grønbech-Jensen

    Physical Review B 64, 134508 (2001).

  135. A rate equation model for the growth of metallic thin films in ion beam assisted deposition

    Jussi K. Sillanpa¨a¨, Ismo T. Koponen, and Niels Grønbech-Jensen

    Nuclear Instruments and Methods B 184, 523, (2001).

  136. Magnetic interaction between spatially extended superconducting tunnel junctions

    Niels Grønbech-Jensen and Mogens. R. Samuelsen

    Physical Review B 65, 144512 (2002).

  137. Mode-locking in driven vortex lattices with transverse ac-drive and random pinning

    Alejandro B. Kolton, Daniel Dom´ınguez, and Niels Grønbech-Jensen

    Physical Review B 65, 184508 (2002).

  138. Effective temperature in driven vortex lattices with random pinning

    Alejandro B. Kolton, Raphael Exaertier, Leticia F. Cugliandolo, Daniel Dom´ınguez, and Niels Grønbech-Jensen

    Physical Review Letters 89, 227001 (2002).

  139. Disordering Transitions in Vortex Matter: Peak Effect and Phase Diagram

    C. J. Olson, C. Reichhardt, R. T. Scalettar, G. T. Zima´nyi, and N. Grønbech-Jensen

    Physica C 384, 143 (2003).

  140. Rigid Molecular Model for the Assembly Characteristics and Optimal Structure in Molecular Monolayers of Alkanethiols on Au(111)

    Niels Grønbech-Jensen, Atul N. Parikh, K. M. Beardmore, and Rashmi C. Desai

    LANGMUIR 19, 1474 (2003).

  141. Metastability and transient effects in vortex matter near a disorder driven transition

    C. J. Olson, C. Reichhardt, R. T. Scalettar, G. T. Zima´nyi, and N. Grønbech-Jensen

    Physical Review B 67, 184523 (2003).

  142. Thermal escape from zero-voltage states in hysteretic superconducting interferometers

    Niels Grønbech-Jensen, Daniel B. Thompson, Matteo Cirillo, and Carlo Cosmelli

    Physical Review B 67, 224505 (2003).

  143. Transverse phase-locking in fully frustrated Josephson junction arrays: a new type of fractional steps

    Vero´ nica I. Marconi, Alejandro B. Kolton, Daniel Dom´ınguez, and N. Grønbech-Jensen

    Physical Review B 68, 104521 (2003).

  144. Microwave-induced thermal escape in Josephson junctions

    N. Grønbech-Jensen, M. G. Castellano, F. Chiarello, M. Cirillo, C. Cosmelli, L. Filippenko, R. Russo, and G. Torrioli

    Physical Review Letters 93, 107002 (2004).

  145. Transcription-driven twin supercoiling of a DNA loop

    Steven P. Mielke, William H. Fink, V.V. Krishnan, Niels Grønbech-Jensen, and Craig J. Benham

    Journal of Chemical Physics 121, 8104 (2004).

  146. Ac-induced thermal vortex escape in magnetic-field-embedded long annular Josephson junctions

    Niels Grønbech-Jensen and Matteo Cirillo

    Physical Review B 70, 214507 (2004).

  147. Non-iterative and exact method for constraining particles in a linear geometry

    Horacio Tapia-McClung and Niels Grønbech-Jensen

    Journal of Polymer Science B: Polymer Physics 43, 911 (2005) ibid. 48, 2604 (2010).

  148. Microwave induced fluxon bunching in weakly coupled Josephson junctions

    Søren Madsen and Niels Gønbech-Jensen

    Physical Review B 71, 132506 (2005).

  149. Vacancy assisted arsenic diffusion and time dependent clustering effects in silicon

    Benjamin P. Haley and Niels Grønbech-Jensen

    Physical Review B 71, 195203 (2005) ibid. 82, 119905(E) (2010).

  150. Rabi-type oscillations in a classical Josephson junction

    Niels Grønbech-Jensen and Matteo Cirillo

    Physical Review Letters 95, 067001 (2005).

  151. Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA

    Steven P. Mielke, Niels Grønbech-Jensen, V.V. Krishnan, William H. Fink, and Craig J. Benham

    Journal of Chemical Physics 123, 124911 (2005).

  152. Meso-scale computer modeling of lipid-DNA complexes for gene therapy

    Oded Farago, Niels Grønbech-Jensen, and Philip Pincus

    Physical Review Letters 96, 018102 (2006).

  153. Investigation of Josephson interferometer potentials by ac excitations

    M. Cirillo, P. Carelli, M.G. Castellano, F. Chiarello, C. Cosmelli, N. Grønbech-Jensen, R. Leoni, J.E. Marchese, F. Mattioli, D. Simeone, and G. Torrioli

    Physica C 437-438, 46 (2006).

  154. Classical analysis of phase-locking transients and Rabi-type oscillations in microwave-driven Josephson junctions

    Jeffrey E. Marchese, Matteo Cirillo, and Niels Grønbech-Jensen

    Physical Review B 73, 174507 (2006).

  155. Vacancy clustering and diffusion in silicon: Kinetic lattice Monte Carlo simulations

    Benjamin P. Haley, Keith M. Beardmore, and Niels Grønbech-Jensen

    Physical Review B 74, 045217 (2006).

  156. Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae

    Shawn Cokus, Sherri Rose, David Haynor, Niels Grønbech-Jensen, and Matteo Pellegrini

    BMC BioInformatics 7, 381 (2006).

  157. Computational and Analytical Modeling of Cationic Lipid-DNA Complexes

    Oded Farago and Niels Grønbech-Jensen

    Biophysical Journal 92, 3228 (2007).

  158. Simulating Ramsey-type fringes in a pulsed microwave-driven classical Josephson junction

    Jeffrey E. Marchese, Matteo Cirillo, and Niels Grønbech-Jensen

    Open Systems & Information Dynamics 14, 189 (2007).

  159. Catastrophe observation in a Josephson junction system

    M. G. Castellano, F. Chiarello, R. Leoni, F. Mattioli, G. Torrioli, P. Carelli, M. Cirillo, C. Cosmelli, A. de Waard, G. Frossati, N. Grønbech-Jensen, and S. Poletto

    Physical Review Letters 98, 177002 (2007).

  160. Influence of interatomic bonding potentials on detonation properties

    Andrew J. Heim, Niels Grønbech-Jensen, Timothy C. Germann, Edward M. Kober, Brad Lee Holian, and Peter S. Lomdahl

    Physical Review E 76, 026318 (2007).

  161. Thiol density-dependent classical potential for methyl thiol on a Au(111) surface

    Byoungseon Jeon, Joel D. Kress, and Niels Grønbech-Jensen

    Physical Review B 76, 155120 (2007).

  162. Classical analogs for Rabi-oscillations, Ramsey-fringes, and spin-echo in Josephson junctions

    Jeffrey E. Marchese, Matteo Cirillo, and Niels Grønbech-Jensen

    European Physical Journal 147, 333 (2007).

  163. Potential characterization of a double SQUID device for quantum computing experiments

    F. Chiarello, F. Carelli, M. G. Castellano, M. Cirillo, C. Cosmelli, G. Frossati, N. Grønbech-Jensen, F. Mattioli, S. Poletto, G. Torrioli, and A. de Waard

    IEEE Transactions on Applied Superconductivity 17, 124 (2007).

  164. Long Josephson junction stack coupled to a cavity

    S. Madsen, N. F. Pedersen, and N. Grønbech-Jensen

    IEEE Transactions on Applied Superconductivity 17, 926 (2007).

  165. Parallel TREE code for two-component ultracold plasma analysis

    Byoungseon Jeon, Joel D. Kress, Lee A. Collins, and Niels Grønbech-Jensen

    Computer Physics Communications 178, 272 (2008).

  166. Transitions between distinct compaction regimes in complexes of multivalent cationic lipids and DNA

    Oded Farago, Kai Ewert, Ayesha Ahmad, Heather M. Evans, Niels Grønbech-Jensen, and Cyrus R. Safinya

    Biophysical Journal 95, 836 (2008).

  167. Brownian dynamics of double-stranded DNA in periodic systems with discrete salt

    Steven P. Mielke, Niels Grønbech-Jensen, and Craig J. Benham

    Physical Review E 77, 031924 (2008).

  168. Energy relaxation rates in dense hydrogen plasmas

    B. Jeon, M. Foster, J. Colgan, G. Csanak, J. D. Kress, L. A. Collins, and N. Grønbech-Jensen

    Physical Review E 78, 036403 (2008).

  169. Interaction potential for atomic simulations of conventional high explosives

    Andrew J. Heim, Niels Grønbech-Jensen, Edward M. Kober, Jerome J. Erpenbeck, and Timothy C. Germann

    Physical Review E 78, 046709 (2008).

  170. Molecular dynamics simulations of detonation instability

    Andrew J. Heim, Niels Grønbech-Jensen, Edward M. Kober, and Timothy C. Germann

    Physical Review E 78, 046710 (2008).

  171. High-Q cavity-induced fluxon bunching in inductively coupled Josephson junctions

    S. Madsen, N. Grønbech-Jensen, N. F. Pedersen, and P. L. Christiansen

    Physical Review B 78, 174525 (2008).

  172. First principles calculations for scintillation in Ce-Doped Y and La oxyhalides

    Anurag Chaudhry, Andrew Canning, Rostylav Boutchko, Yetta Denise Porter-Chapman, Edith Bourret-Courchesne, Stephen E. Derenzo, and Niels Grønbech-Jensen

    IEEE Transactions on Nuclear Science 56, 949 (2009).

  173. Efficient parallel algorithm for statistical ion track simulations in crystalline materials

    Byoungseon Jeon and Niels Grønbech-Jensen

    Computer Physics Communications 180, 231 (2009).

  174. Classical analysis of capacitively coupled superconducting qubits

    James A. Blackburn, Jeffrey E. Marchese, Matteo Cirillo, and Niels Grønbech-Jensen

    Physical Review B 79, 054516 (2009).

  175. Simulation of self-assembly of cationic lipids and DNA into structured complexes

    Oded Farago and Niels Grønbech-Jensen

    Journal of the American Chemical Society 131, 2875 (2009).

  176. Investigation of resonant and transient phenomena in Josephson junction flux qubits

    Jeffrey E. Marchese, Matteo Cirillo, and Niels Grønbech-Jensen

    Physical Review B 79, 094517 (2009).

  177. Persistence lengths of DNA obtained from Brownian dynamics simulations

    Steven P. Mielke, Craig J. Benham, and Niels Grønbech-Jensen

    Journal of Physical Chemistry A 113, 4213 (2009).

  178. Ab initio construction of interatomic potentials for uranium dioxide across all interatomic distances

    P. Tiwary, A. van de Walle, and Niels Grønbech-Jensen

    Physical Review B 80, 174302 (2009).

  179. On the classical model for microwave induced escape from a Josephson washboard potential

    James A. Blackburn, Matteo Cirillo, and Niels Grønbech-Jensen

    Physics Letters A 374, 2827 (2010).

  180. Simulation of ion track ranges in uranium dioxide

    Byoungseon Jeon, Mark Asta, Steven M. Valone, and Niels Grønbech-Jensen

    Nuclear Instruments and Methods in Physics Research B 268, 2688 (2010).

  181. Tomography and entanglement in coupled Josephson junction qubits

    Niels Grønbech-Jensen, Jeffrey E. Marchese, Matteo Cirillo, and James A. Blackburn

    Physical Review Letters 105, 010501 (2010).

  182. Order at the edge of the bilayer: Membrane remodeling at the edge of a planar supported bilayer is accom- panied by a localized phase change

    Andreia Smith, Madhuri Vinchurkar, Niels Grønbech-Jensen, and Atul Parikh

    Journal of the American Chemical Society 132, 9320 (2010).

  183. Cascade-driven mixing at metal oxide interfaces

    S. M. Valone, B. P. Uberuaga, X.-Y. Liu, B. Jeon, A. Chaudhry, and N. Grønbech-Jensen

    Nuclear Instruments and Methods in Physics Research B 268, 3114 (2010).

  184. First-principles computational study of defect clustering in solid solutions of ThO2 with trivalent oxides

    Vitaly Alexandrov, Niels Grønbech-Jensen, Alexandra Navrotsky, and Mark Asta

    Physical Review B 82, 174115 (2010).

  185. Effects of void size, density, and arrangement on deflagration and detonation sensitivity of a reactive emperical bond order high explosive

    S. Davis Herring, Timothy C. Germann, and Niels Grønbech-Jensen

    Physical Review B 82, 214108 (2010).

  186. Interatomic potentials for mixed oxide and advanced nuclear fuels

    Pratyush Tiwary, Axel van de Walle, Byoungseon Jeon, and Niels Grønbech-Jensen

    Physical Review B 83, 094104 (2011).

  187. First-principles studies of luminescence in Ce doped inorganic scintillators

    A. Canning, A. Chaudhry, R. Boutchko, N. Grønbech-Jensen

    Physical Review B 83, 125115 (2011).

  188. First-principles studies of Ce-doped RE2M2O7(RE=Y,La; M=Ti,Zr,Hf): A class of non-scintillators

    A. Chaudhry, A. Canning, R. Boutchko, M. J. Weber, N. Grønbech-Jensen, and S. E. Derenzo

    Journal of Applied Physics 109, 083708 (2011).

  189. Molecular simulation analysis of structural variations in lipoplexes

    Oded Farago and Niels Grønbech-Jensen

    Soft Matter 7, 4302 (2011).

  190. First-principles study of the energetics of charge and cation mixing in U1−xCexO2

    1. E. Hanken, C. R. Stanek, N. Grønbech-Jensen, and M. Asta

    Physical Review B 84, 085131 (2011).

  191. Classical statistical model for distribution of escape events in swept-bias Josephson junctions

    James A. Blackburn, Matteo Cirillo, and Niels Grønbech-Jensen

    Physical Review B 85, 104501 (2012).

  192. Energetics of cation mixing in urania-ceria solid solutions with stoichiometric oxygen concentrations

    B. E. Hanken, T. Y. Shvareva, N. Grønbech-Jensen, C. R. Stanek, M. Asta, and A. Navrotsky

    Physical Chemistry Chemical Physics 14, 5680 (2012).

  193. Breakdown of the classical description of a local system

    Eran Kot, Niels Grønbech-Jensen, Bo M. Nielsen, Jonas S. Neergaard-Nielsen, Eugene Polzik, and Anders S. Sørensen

    Physical Review Letters 108, 233601 (2012).

  194. Shallow impurity level calculations in semiconductors using ab initio methods

    Gaigong Zhang, Andrew Canning, Niels Grønbech-Jensen, Steven E. Derenzo, and Lin-Wang Wang

    Physical Review Letters 110, 166404 (2013).

  195. Phase characterization, thermal stability, high temperature transport properties and electronic structure of the rare-earth Zintl phosphides Eu3M2P4 (M=Ga,In)

    Tanghong Yi, Gaigong Zhang, Naohito Tsujii, Jean-Pierre Fleurial, Alex Zevalkink, G. Jeffrey Snyder, Niels Grønbech-Jensen, and Susan M. Kauzlarich

    Inorganic Chemistry 52, 3787 (2013).

  196. A simple and effective Verlet-type algorithm for simulating Langevin dynamics

    Niels Grønbech-Jensen and Oded Farago

    Molecular Physics 111, 983 (2013).

  197. Theoretical study of mixing energetics in homovalent fluorite-structured oxide solid solutions

    Vitaly Alexandrov, Niels Grønbech-Jensen, Alexandra Navrotsky, and Mark Asta

    Journal of Nuclear Materials 444, 292 (2014).

  198. Application of the G-JF discrete-time thermostat for fast and accurate molecular simulations

    Niels Grønbech-Jensen, Natha Robert Hayre, and Oded Farago

    Computer Physics Communications 185, 524 (2014).

  199. Langevin dynamics in inhomogeneous media: Re-examining the Itoˆ -Stratonovich dilemma

    Oded Farago and Niels Grønbech-Jensen

    Physical Review E 89, 013301 (2014).

  200. First-principles study of luminescence in Eu2+-doped inorganic scintillators

    1. Chaudhry, R. Boutchko, S. Chourou, G. Zhang, N. Grønbech-Jensen, and A. Canning

      Physical Review B 89, 155105 (2014).

  201. Towards equatorial planarity about uranyl: Synthesis and structure of tridentate nitrogen-donor UO2 com- plexes

    Roy Copping, Byoungseon Jeon, C. Das Pemmaraju, Shuao Wang, Simon J. Teat, Markus Janousch, Tolek Tyliszczak, Andrew Canning, Niels Grønbech-Jensen, David Prendergast, and David K. Shuh

    Inorganic Chemistry 53, 2506 (2014).

  202. Elasticity and mechanical instability of charged lipid bilayers in ionic solutions

    Y. Y. Avital, N. Grønbech-Jensen, and O. Farago

    European Physical Journal E 37, 69 (2014). (Journal Cover Illustration).

  203. Fluctuation-dissipation relation for systems with spatially varying friction

    Oded Farago and Niels Grønbech-Jensen

    Journal of Statistical Physics 156, 1093 (2014).

  204. Switching current distributions in Josephson junctions at very low temperatures

    James A. Blackburn, Matteo Cirillo, and Niels Grønbech-Jensen

    Europhysics Letters (EPL) 107, 67001 (2014).

  205. Constant pressure and temperature discrete-time Langevin molecular dynamics

    Niels Grønbech-Jensen and Oded Farago

    Journal of Chemical Physics 141, 194108 (2014).

  206. Effects of applied strain on radiation damage generation in body-centered cubic iron

    Benjamin Beeler, Mark Asta, Peter Hosemann, Niels Grønbech-Jensen

    Journal of Nuclear Materials 459, 159 (2015).

  207. A high temperature mechanical study on PH 13-8 Mo maraging steel

    Z. Huang, M.D. Abad, J.K. Ramsey, M. Rebelo de Figueiredo, D. Kaoumi, N. Li, M. Asta, N. Grønbech-Jensen, and P. Hosemann

    Materials Science & Engineering A 651, 574 (2016).

  208. A survey of classical and quantum interpretations of experiments on Josephson junctions at very low temperatures

    James A. Blackburn, Matteo Cirillo, and Niels Grønbech-Jensen

    Physics Reports 611, 1 (2016).

  209. The thermodynamics of endosomal escape and DNA release from lipoplexes

    Yotam Avital, Niels Grønbech-Jensen, and Oded Farago

    Physical Chemistry Chemical Physics 18, 2591 (2016).

  210. On the connection between dissipative particle dynamics and the Ito-Stratonovich dilemma

    Oded Farago and Niels Grønbech-Jensen

    Journal of Chemical Physics 144, 084102 (2016).

  211. Effect of strain and temperature on the threshold displacement energy in body-centered cubic iron

    Benjamin Beeler, Mark Asta, Peter Hosemann, and Niels Grønbech-Jensen

    Journal of Nuclear Materials 474, 113 (2016).

  212. Isothermal Langevin dynamics in systems with power-law, spatially dependent friction

    Shaked Regev, Niels Grønbech-Jensen, and Oded Farago

    Physical Review E 94, 012116 (2016).

  213. The G-JF thermostat for accurate configurational sampling in soft-matter simulations

    Evyatar Arad, Oded Farago, and Niels Grønbech-Jensen

    Israel Journal Chemistry 56, 629 (2016).

  214. Dimensionality effects in void-induced explosive sensitivity

    S. Davis Herring, Timothy C. Germann, and Niels Grønbech-Jensen

    Combustion Theory and Modelling 20, 866 (2016).

  215. Frequency spectrum of a superconducting metadevice

    James A. Blackburn, Matteo Cirillo, and Niels Grønbech-Jensen

    Europhysics Letters (EPL) 115, 50004 (2016).

  216. Coordination characteristics of uranyl BBP complexes: insights from an electronic structure analysis

    Chaitanya Pemmaraju, Ray Copping, Danil Smiles, David Shuh, Niels Grønbech-Jensen, David Prendergast, and Andrew Canning

    American Chemical Society (ACS) Omega 2, 1055 (2017).

  217. Investigation of low temperature quantum crossover in Josephson junctions

    James A. Blackburn, Matteo Cirillo, and Niels Grønbech-Jensen

    Journal of Applied Physics 122, 133904 (2017).

  218. Non-equilibrium transient phenomena in the washboard potential

    Chungho Cheng, Matteo Cirillo, Gaetano Salina, and Niels Grønbech-Jensen

    Physical Review E 98, 012140 (2018).

  219. Accurate configurational and kinetic statistics in discrete-time Langevin systems

    Lucas Frese Grønbech Jensen and Niels Grønbech-Jensen

    Molecular Physics 117, 2511 (2019).

  220. The effects of intrinsic dynamical ghost modes in discrete-time Langevin simulations

    Lucas Frese Grønbech Jensen and Niels Grønbech-Jensen

    Computer Physics Communications 249, 107011 (2020).

  221. Complete set of stochastic Verlet-type thermostats for correct Langevin simulations

    Niels Grønbech-Jensen

    Molecular Physics 118, e1662506 (2020).

  222. Defining velocities for accurate kinetic statistics in the Grønbech-Jensen Farago thermostat

    Niels Grønbech-Jensen and Oded Farago

    Physical Review E 101, 22123 (2020).

  223. Modeling escape from a one-dimensional potential well at zero or very low temperatures

    Chungho Cheng, Gaetano Salina, Niels Grønbech-Jensen, James A. Blackburn, Massimiliano Lucci, and Matteo Cirillo

    Journal of Applied Physics 127, 143901 (2020).

  224. The challenge of stochastic Størmer-Verlet thermostats generating correct statistics

    Joshua Finkelstein, Chungho Cheng, Giacomo Fiorin, Benjamin Seibold, and Niels Grønbech-Jensen

    Journal of Chemical Physics 153, 134101 (2020).

  225. Dissipation dependent thermal escape from a macroscopic quantum potential well

    Chungho Cheng, Matteo Cirillo, and Niels Grønbech-Jensen

    Entropy 23, 1315 (2021).

  226. Bringing discrete-time Langevin splitting methods into agreement with thermodynamics

    Joshua Finkelstein, Chungho Cheng, Giacomo Fiorin, Benjamin Seibold, and Niels Grønbech-Jensen

    Journal of Chemical Physics 155, 184104 (2021).

    Conference Proceedings and Book Chapters:


    1. Phase locking of fluxon oscillations in long Josephson junctions

      G. Filatrella, N. Grønbech-Jensen, R. Monaco, S. Pagano, R. D. Parmentier, N. F. Pedersen, G. Rotoli, M. Salerno, and M. R. Samuelsen

      In “Nonlinear superconductive electronics and Josephson devices”,

      G. Costabile, S. Pagano, N. F. Pedersen, and M. Russo, eds. (Plenum, London, 1991), pp. 253-269.

    2. Application of the Bäcklund-transformation in the sine-Gordon system

      M. G. Forest, E. A. Overman II, P. L. Christiansen, M. P. Soerensen, N. Grønbech-Jensen, R. Flesch, D. W. McLaugh- lin, R. D. Parmentier, and S. Pagano

      In “Nonlinear superconductive electronics and Josephson devices”,

      G. Costabile, S. Pagano, N. F. Pedersen, and M. Russo, eds. (Plenum, 1991), pp. 403-413.

    3. Langevin dynamics simulations of large frustrated Josephson junction arrays

      N. Grønbech-Jensen, A. R. Bishop, and P. S. Lomdahl

      In “Phenomenology and Applications of High Temperature Superconductors”,

      K. S. Bedell and J. R. Schrieffer, eds. (Addison-Wesley, 1992), p. 515.

    4. Generation of sub-Poisson distribution of light

      P. S. Ramanujam and Niels Grønbech-Jensen

      The Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Proceedings 1622, 206 (1992).

    5. Coupled Josephson soliton oscillators

      T. Holst, L. E. Guerrero, J. B. Hansen, N. Grønbech-Jensen, and J. A. Blackburn

      Springer Proceedings in Physics 64, 389 (1992), “Superconducting devices and their applications”,

      H. Koch and H. Lu¨ bbig, eds. (Springer-Verlag, 1992).

    6. 50 GFlops Molecular Dynamics on the Connection Machine 5

      Peter S. Lomdahl, Pablo Tamayo, Niels Grønbech-Jensen, and David Beazley

      Supercomputing ’93 (Nov. 15-19),

      IEEE Computer Society Press, p.520 (1993).

    7. Flux lattice relaxation, noise and symmetry-breaking in frustrated Josephson junction arrays

      N. Grønbech-Jensen, A. R. Bishop, and P. S. Lomdahl

      In ‘Field Theory and Collective Phenomena’ (Perugia, Italy, 28-31 May, 1992),

      eds. S. De Lillo, P. Sodano, F. C. Khanna, and G. W. Semenoff. World Scientific, p.148 (1995).

    8. A high performance communications and memory cashing scheme for molecular dynamics on the CM-5

      David M. Beazley, Peter S. Lomdahl, Niels Grønbech-Jensen, and Pablo Tamayo In ‘The 8th International Parallel Processing Symposium’

      Cancu´ n, Mexico (1994),

      IEEE Computer Society Press, p.800.

    9. Constrained Langevin dynamics of polypeptide chains

      Niels Grønbech-Jensen and Sebastian Doniach

      In ‘Statistical Mechanics, Protein Structure and Protein Substrate Interactions’, ed. S. Doniach Carge`se, Corsica (France), June 1-5, 1993.

      NATO ASI Series B 325, 159 (1994).

    10. Disorder-induced breakdown of soliton and polaron particles

      1. R. Bishop, David Cai, N. Grønbech-Jensen, and M. I. Salkola

        In Fluctuation Phenomena: Disorder and Nonlinearity, Madrid, Spain, Sept. 27 - Oct. 1, 1994; World Scientific, Singapore (1996), p.316.

    11. Dynamics of current driven disordered Josephson junction arrays

      Daniel Domînguez, Niels Grønbech-Jensen, and A. R. Bishop

      in Macroscopic Quantum Phenomena and Coherence in Superconducting Networks, eds. Giovannella, C. and Tinkham, M., (World Scientific), p. 278 (1995).

    12. Molecular dynamics simulations of low energy boron and arsenic implant into silicon

      Keith M. Beardmore, David Cai, and Niels Grønbech-Jensen

      IEEE Proceedings of ”The Eleventh International Conference on Ion Implantation Technology”, Austin, Texas June 17-21 1996. p.535.

    13. An electronic stopping power model for Monte Carlo and molecular dynamics simulation of ion implantation into silicon

      David Cai, Niels Grønbech-Jensen, Charles M. Snell, Keith M. Beardmore, Al F. Tasch, and Steven Morris

      IEEE Proceedings of ”The Eleventh International Conference on Ion Implantation Technology”,

      Austin, Texas June 17-21 1996. p.543.

    14. Multiple routes for vortex depinning in amorphous thin film superconductors

      Niels Grønbech-Jensen, Alan R. Bishop, and Daniel Dom´ınguez ”XXI International Conference on Low Temperature Physics”

      (August 8-14, 1996, Prague, Czech Republic). Czechoslovak Journal of Physics 46, 915 (1996).

    15. Molecular-dynamics simulations of fracture: an overview of system size and other effects

      1. L. Holian, S. J. Zhou, P. S. Lomdahl, N. Grønbech-Jensen, D. M. Beazley, and R. Ravelo

      Materials Research Society Symposium 409, 3 (1996).

    16. Molecular dynamics simulation of self-assembled monolayers with defects

      K. M. Beardmore, N. Grønbech-Jensen, J. D. Kress, and A. N. Parikh

      Abstracts of Papers of The American Chemical Society 214, 6 (1997).

    17. Dynamics of non-planar vortices in the classical 2D anisotropic Heisenberg model at finite temperature

      T. Kamppeter, F. G. Mertens, A. Sa´nchez, N. Grønbech-Jensen, A. R. Bishop, and Francisco Dom´ınguez-Adame

      Proceedings of the 165th Heraeus Seminar (Bad Honnef, Germany)

      ”Theory of Spin Lattices and Lattice Gauge Models” (Springer Verlag, Berlin, 1997).

    18. Understanding ion and water transport in proton conducting membranes: From molecular structures to transport modeling

      S. J. Paddison, R. Paul, K. Ø. Rasmussen, N. Grønbech-Jensen, and T. A. Zawodzinski

      Abstracts of Papers of The American Chemical Society 217, 371 (1999).

    19. Predicting low energy dopant implant profiles in semiconductors using molecular dynamics

      Keith M. Beardmore and Niels Grønbech-Jensen

      Proceedings from the 195th semi-annual meeting of the ElectroChemical Society 99-2, 3 (1999), May 2-6, 1999, Seattle, Washington

    20. Direct simulation of ion beam induced stressing and amorphization of silicon

      Keith M. Beardmore and Niels Grønbech-Jensen

      Proceedings from the 195th semi-annual meeting of the ElectroChemical Society 99-2, 96 (1999), May 2-6, 1999, Seattle, Washington

    21. Characterization and Modeling of the Interface of Hydrated Nafion

      S. Paddison, R. Paul, K. Rasmussen, N. Grønbech-Jensen, and T. Zawodzinski

      Proceedings from the 195th semi-annual meeting of the ElectroChemical Society, May 2-6, 1999, Seattle, Washington

    22. Nonlinear localization in a disordered system

      K. Ø. Rasmussen, D. Cai, A. R. Bishop, and Niels Grønbech-Jensen

      AIP Conf. Proc. 502, 538 (2000).

    23. Ordenamiento dinamico del flujo de vortices en films superconductores: ruido, difusion y orden traslacional

      Alejandro B. Kolton, Daniel Dom´ınguez, C. J. Olson, and Niels Grønbech-Jensen

      Revista de la Asociacion Fisica Argentina, 1998.

    24. Ordenamiento dinamico en el eje c en superconductores laminares altamente anisotropicos

      Alejandro B. Kolton, Daniel Dom´ınguez, C. J. Olson, and Niels Grønbech-Jensen

      Revista de la Asociacion Fisica Argentina (Anales AFA) 12, 148 (2000).

    25. Sincronizacion temporal en redes de vortices fuera del equilibrio en medios desordenados

      Alejandro B. Kolton, Daniel Dom´ınguez, and Niels Grønbech-Jensen

      Revista de la Asociacion Fisica Argentina (Anales AFA) 12, 142 (2000).

    26. Modelling surface growth in Ion Beam Assisted Deposition with rate equations

      Jussi K. Sillanpa¨a¨, Ismo T. Koponen, and Niels Grønbech-Jensen

      Proceedings from Materials Research Society Symposium 648, P3.7 (2000).

    27. Shearing materials of spatially extended grains

      Boris Jeremic and Niels Grønbech-Jensen

      Proceedings from the ”Third International Conference on Discrete Element Methods”, Santa Fe, NM (September 2002).

      ASCE Conf. Proc. 259, 47 (2002).

    28. Molecular dynamics simulations of detonation in defective explosive crystals

      T. C. Germann, B. L. Holian, P. S. Lomdahl, A. J. Heim, N. Grønbech-Jensen, and J. B. Maillet

      Proceedings from the ”12th International Detonation Symposium”, San Diego CA (August 2002).

    29. Rate equation modeling of ion beam assisted homoepitaxy on low-index surfaces of Ag and Cu

      Jussi K. Sillanpa¨a¨, Ismo T. Koponen, and Niels Grønbech-Jensen

      Proceedings from Materials Research Society Symposium 721, J4.71-J4.76 (2002).

    30. Diffusion mechanisms and capture radii in silicon

      K.M. Beardmore, W. Windl, B.P. Haley, and N. Grønbech-Jensen

      Proceedings from MSM 2002, p.251, April 22-25, 2002, San Juan, Puerto Rico.

    31. Anomalous thermal escape in Josephson systems perturbed by microwaves

      N. Grønbech-Jensen, M. G. Castellano, F. Chiarello, M. Cirillo, C. Cosmelli, V. Merlo, R. Russo, and G. Torrioli

      Quantum Computing: Solid State Systems, pp. 111-119 (2006). Eds. B. Ruggiero, P. Delsing, C. Granata, Y. Paskin, and P. Silvestrini

      Kluwer Academic/Plenum Publishers (Springer, NY, 2006). ISBN-10: 0-387-26332-2; ISBN-13: 978-0387-26332-8; cond-mat/0412692.


      Other Publications:


      1. High-performance computational biology

        Niels Grønbech-Jensen and Peter Lomdahl

        Journal of the Advanced Computing Laboratory (JACL) II-3, 1 (1994), Los Alamos National Laboratory.

      2. Materials diagnostics

        Niels Grønbech-Jensen

        Advanced Computing Laboratory (brochure) Iss. 3, 10 (1994), Los Alamos National Laboratory.

      3. Constrained Langevin dynamics for molecular simulations

        Niels Grønbech-Jensen and Peter Lomdahl

        Advanced Computing Laboratory (brochure) Iss. 3, 48 (1994), Los Alamos National Laboratory.

      4. Refinement of protein crystal structures

        Matteo Pellegrini, Niels Grønbech-Jensen, Jennifer A. Kelly, Gaston M. U. Pfluegl, and Todd O. Yeates

        Cover of University of California Directed Research and Development Activities for Fiscal Year 1997; pp. 33-39, Los Alamos National Laboratory.